Talks-CAMERA

X-ray Free-Electron Lasers

Structure determination from experimental multi-particle fluctuation scattering data, Zwart, Petrus H, 5th Ringberg Meeting on Structural Biology with FELs, Max Planck Geselschafft Ringberg Castle, February 2018

Structure determination from experimental multi-particle fluctuation scattering data, Zwart, Petrus H, PETRA-IV planning meeting, Hamburg, DESY, February 2018

Structure determination from experimental multi-particle fluctuation scattering data, Zwart, Petrus H, Netherland Cancer Institute, Amsterdam, February 2018

Fluctuation X-ray Scattering, Zwart, Petrus H, LCLS-II-HE First experiments meeting, Stanford Linear Accelerator Center, October 2017

Fluctuation X-ray scattering at the ALSu, Zwart, Petrus H. ALS-U: Solving scientific challenges with coherent soft X-rays, January 2017.

From Blobology to Biology: How advanced mathematics and algorithms can enable new
high-resolution studies of uncrystallized biomolecules at the LCLS-II-HE, Donatelli, Jeffrey, LCLS-II-HE First Experiments Meeting: AMO, Biology, and Quantum Materials, SLAC National Accelerator Laboratory, Menlo Park, CA, November 2017.

New Mathematics for Next-Generation X-ray Imaging, Donatelli, Jeffrey, 2017 ASCR Applied Mathematics Principal Investigators Meeting, Rockville, MD, September 2017.

Reconstruction Algorithms for Next-Generation Imaging: Multi-Tiered Iterative Phasing
for Fluctuation X-ray Scattering and Single-Particle Diffraction, Donatelli, Jeffrey, AI-at-SLAC Seminar, SLAC National Accelerator Laboratory, Menlo Park, CA, August 2017.

Femtosecond Structural Dynamics of Photoactive Yellow Protein, Pande, Kanupriya, IUCr Congress, Hyderabad, India, August 2017.

New approaches to structure determination from uncrystallized biomolecules, Donatelli, Jeffrey, UWM Colloquium, Milwaukee, WI, April 2017.

Reconstruction of RDV and PR772 from angular correlations via multi-tiered iterative
phasing, Donatelli, Jeffrey, Single Particle Initiative Data Analysis Meeting, March 2017.

Analysis of XFEL Scattering Data from Nanocrystals and Biomolecules, Pande, Kanupriya, CRD Postdoc Seminar, LBL, Berkeley, CA, March 2017.

Data analysis challenges for next-generation imaging, Donatelli, Jeffrey, CS Strategy for Data, Berkeley, CA, December 2016.

Fluctuation X-ray Scattering, Zwart, Petrus H, LCLS-II-HE First experiments meeting, Stanford Linear Accelerator Center, SSRL user meeting, October 2016

Fluctuation X-ray scattering analysis of single particle RDV data, Donatelli, Jeffrey, Single Particle Initiative Data Analysis Meeting, February 2016.

Macromolecular Reconstruction from Fluctuation X-ray Scattering and Single-Particle
Diffraction, Donatelli, Jeffrey, 2016 Linac Coherent Light Source User Meeting, SLAC National Accelerator Laboratory, Menlo Park, CA, October 2016.

Multi-tiered iterative phasing for fluctuation X-ray scattering and single-particle diffraction, Donatelli, Jeffrey, 12th International Conference on Biology and Synchrotron Radiation, SLAC National Accelerator Laboratory, Menlo Park, CA, August 2016.

Multi-tiered iterative phasing for fluctuation X-ray scattering and single particle imaging, Donatelli, Jeffrey, BioXFEL 3rd International Conference, San Juan, Puerto Rico, January 2016.

New Mathematics for Single and Multiple Particle Analysis from XFEL Data, Donatelli, Jeffrey, Future Electron Microscopy at LBNL Workshop, Berkeley, CA, October 2016.

Reconstruction algorithms for next generation imaging: Multi-tiered iterative phasing
for fluctuation X-ray scattering and single-particle diffraction, Donatelli, Jeffrey, The Center for Advanced Mathematics for Energy Research Applications (CAMERA) Seminar, Lawrence Berkeley National Laboratory, Berkeley, CA, May 2016.

Structure determination from fluctuation X-ray scattering and single-particle diffraction
via multi-tiered iterative phasing, Donatelli, Jeffrey Biological Physics Seminar, Arizona State University, Tempe, AZ, November 2016.

Fluctuation X-ray Scattering, Zwart, Petrus H, Janelia Crystallography Conference, Janelia Farm / HHMI,  October 2015

Fluctuation X-ray Scattering, Zwart, Petrus H, LCLS-II Scientific Opportunities Workshops, February 2015

Macromolecular reconstruction from fluctuation X-ray scattering, Donatelli, Jeffrey, External Computing Sciences Strategic Plan Review, Lawrence Berkeley National Laboratory, Berkeley, CA, September 2015.

Multi-tiered iterative phasing for fluctuation X-ray scattering reconstruction, Donatelli, Jeffrey,  2015 Advanced Light Source User Meeting, Lawrence Berkeley National Laboratory, Berkeley,
CA, October 2015.

Algorithms for X-ray nanocrystallography in the presence of the indexing ambiguity, Donatelli, Jeffrey, BES Triennial Ops Review, Lawrence Berkeley National Laboratory, Berkeley, CA, March 2014.

Algorithms for X-ray nanocrystallography in the presence of the indexing ambiguity, Donatelli, Jeffrey, Mathematics and Statistical Methodologies for DOE Data-Centric Science at Scale, Lawrence Berkeley National Laboratory, Berkeley, CA, March 2014.

An algorithmic framework for X-ray nanocrystallographic reconstruction in the presence
of the indexing ambiguity, Donatelli, Jeffrey, Applied Mathematics Seminar, UC Berkeley, Berkeley, CA, April 2014.

Fluctuation Scattering, Zwart, Petrus H., Gordon Research Conference: Diffraction Methods in Structural Biology, Lewiston, Maine, July 2014.

Biological Solution Scattering with an FEL: challenges and opportunities, Zwart, Petrus H. Photon Sciences Seminar, SLAC, October  2013.

Compressive phase retrieval for X-ray nanocrystallography, Donatelli, Jeffrey, 2013 DOE CSGF Annual Program Review, Arlington, VA, July 2013.

Orientation recovery in single particle X-ray imaging: A diffusion map approach, Donatelli, Jeffrey, Applied Mathematics Seminar, UC Berkeley, Berkeley, CA, April 2012.

New Light on Disordered Ensembles: Ab Initio Structure Determination of One Particle from Scattering Fluctuations of Many Copies, Marchesini, Advanced Light Source, Berkeley CA, 2011.

Orientation determination for 3D single molecule diffraction imaging, C. Yang, S. Marchesini,  SPIE Conference San Diego 2011.

Ab Initio Compressive Phase retrieval,  S. Marchesini  IUCR conference Osaka, Japan, 2008.

Inverse problems for ultrafast high resolution x-ray imaging, S. Marchesini, SIAM Conference on Imaging Science, San Diego, CA, July 7-9, 2008.

Computational Lenses, S. Marchesini, The International Workshop on Phase Retrieval and Coherent Scattering, Asilomar, California, USA, June 2007.



Electronic Structure


Numerical methods for Solving Coulpled Cluster Equations, Yang, Chao, Oberwolfach Workshop on Mathematics and Quantum Chemistry, March 2018.

Variational formulation for finding Wannier functions with entangled band structure, Lin, L., MaX Conference on the Materials Design Ecosystem at the Exascale: High-Performance and High-Throughput Computing, Trieste, January 2018

DGDFT: A massively parallel electronic structure calculation tool for electronic structure calculations, Yang, Chao, Workshop on Massively Parallel Computational Chemistry, Kobe, Japan, Jan 2017.

Electronic Structure Calculations for Large Systems, Lin, L., Workshop on Density-Functional Theory and Beyond: Accuracy, Efficiency, and Reproducibility in Computational Materials Science, Berlin, August, 2017

Electronic Structure Calculations for Large Systems, Lin, L., Computational Physics at the Petascale and Beyond (invited talk), APS March Meeting, New Orleans, March, 2017


Fast Algorithms for Estimating Optical Absorption Spectrum, Yang, Chao, IMA Workshop on Nano-optics, Minneapolis, Apr, 2017.


Iterative Methods for Solving Coupled Cluster Equations, Yang, Chao, SIAM Conference on Optimization, Vancouver, May, 2017.

Fast algorithm for estimating optical absorption spectrum via linear response TDDFT, Yang, Chao, Workshop on Mathematical and Computational Methods in Quantum Chemistry, Yale, May 2016

Fast algorithms for hybrid functional electronic structure calculations, Lin, L., International Conference on Algorithms and Applications for Excited State Electronic Structure Theories, CSRC, Beijing, August 2016

Fast algorithms for hybrid functional electronic structure calculations, Lin, L., Workshop on Mathematical and Computational Methods in Quantum Chemistry, Yale, May 2016

Fast electronic structure calculation methods for studying low dimensional nanomaterials, Yang, Chao, SIAM Conference on Mathematical Aspects of Materials, Philadelphia, May 2016

Low-rank approximation in G0W0 Calculation, Yang, Chao, Workshop on Mathematical and Numerical Analysis for Electronic Structure Calculations, Roscoff, Jun, 2016.

Recent Advances in Numerical Methods for Electronic Structure Calculations, Yang, Chao, International Conference on Algorithms and Applications for Excited State Electronic Structure Theories, CSRC, Beijing, August 2016.

Electronic Structure Calculations for Large Systems, Lin, L., Upscaling Electronic Structure: Reduced-Scaling and Multi-Scale Methods (invited talk), Psi-k 2015, San Sebastian, September 2015

Electronic Structure Calculations for Large Systems, Lin, L., Minisymposium on Recent Progress in Multi-scale Modeling at the Intersection of Ab-initio Methods, Mechanics and Mathematics, 13th U.S. National Congress on Computational Mechanics (USNCCM13), San Diego, July 2015

A posteriori error estimates for discontinuous Galerkin methods using non-polynomial basis function, Lin, L., Workshop on Mathematical and Numerical Methods for Complex Quantum Systems, Chicago, March 2014

A posteriori error estimates for discontinuous Galerkin methods using non-polynomial basis function, Lin, L., Workshop on Numerical Solution of PDE Eigenvalue Problems, Oberwolfach, November 2013

Electronic Structure Calculations for Large Systems, Lin, L., Materials defects: Mathematics, Computation, and Engineering Workshop I: Quantum and Atomistic Modeling of Materials Defects, IPAM, October 2012

Electronic Structure Calculations for Large Systems, Lin, L., Thematic Minisymposia: Quantum modeling in molecular simulation, International Council for Industrial and Applied Mathematics (ICIAM 2011), Vancouver, July 2011






GISAXS/WAXS/SAXS



CDGISAXS: Reconstructing Line Etched Patterns Using GISAXS, Kumar, D. SAS 2018, Traverse City, Michigan,  October 2018

HipGISAXS: Modeling GISAS events”, Kumar, D, GISAS Summer School, Bayreuth, Germany, September 2018

Strategies for X-ray Analysis Hexemer, Alexander, GISAS Workshop Munich February 2018

Pursuing the critical dimension in the etched patterns using x-ray scattering Freychet, Guillaume, APS March Meeting 2018, Los Angeles CA, March 2018.

Critical-Dimension Grazing Incidence Small Angle X-ray Scattering Freychet, Guillaume, SPIE advanced lithography 2018, San Jose CA, February 2018.

Towards Real-Time Analysis of Morphologies using Scattering Hexemer, Alexander, APS March meeting 2018

Influence of Molecular Structure Hexemer, Alexander, DOW Chemicals, October 2017

Towards real-time analysis of morphologies using x-ray scattering Freychet, Guillaume, EUVL Workshop 2017, Berkeley CA, June 2017.

Strategies for Multi-Modal Analysis Hexemer, Alexander, APS March meeting 2017

Strategies for Multi-Modal Analysis Hexemer, Alexander, UC Irvine seminar 2017

Strategies for Multi-Modal Analysis Hexemer, Alexander, Air Force Research Lab Dayton Ohio seminar 2017

Strategies for X-ray Analysis Hexemer, Alexander, Columbia University November 2017

Strategies for X-ray Analysis Hexemer, Alexander, NYU November 2017

Xi-CAM: Pursuing the critical dimension using x-ray scattering Freychet, Guillaume, ALS User Meeting 2017, Berkeley CA, October 2017.

Addressing the data challenge at the ALS Hexemer, Alexander, Pandaas2 meeting ESRF July 2016

Addressing the data challenge at the ALS Hexemer, Alexander, AMI seminar Switzerland July 2016

An Automated, High-Throughput System for GISAXS and GIWAXS measurements of thin films Hexemer, Alexander, APS March meeting 2016

X-ray Studies of Nano Composites Hexemer, Alexander, APS March meeting 2016

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, SOLEI France 2015

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, MRS meeting 2015

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, Plenary Talk Small Angle Scattering Meeting September 2015

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, BACATECH Meeting September 2015

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, NSLS II seminar November 2015

Addressing the data challenge in Small Angle Scattering Hexemer, Alexander, WSU seminar 2015

DOE Date Demos and SPOT Hexemer, Alexander, OLCF User Meeting, 2015

Fast Analysis of Time-Resolved Scattering Data Hexemer, Alexander, APS March meeting 2015

High Performance Toolkit for Photon Science Hexemer, Alexander, Oak Ridge National Lab, 2015.

High Performance Toolkit for Photon Science Hexemer, Alexander, canSAS Meeting Kyoto, 2015.

High Performance Toolkit for Photon Science Hexemer, Alexander, Kyoto Institute of Technology, 2015.

High Performance Toolkit for Photon Science Hexemer, Alexander, ISPAC Houston, 2015.

SAXS and WAXS of Soft and Functional Materials hexemer, Alexander, Shanghai Synchrotron Seminar, October 2015

Slot-die printing at the Synchrotron Hexemer, Alexander, NIST seminar, May 2015

Towards Automated Analysis of X-ray Scattering Data Kumar, Dinesh, CSCS Swiss National Supercomputing Center, November 2015

Towards Automated Analysis of X-ray Scattering Data Kumar, Dinesh, Adolphe Merkle Institute, October 2015

Automation of Data Calibration for SAXS/WAXS Scattering Experiments Kumar, Dinesh, 2014 Advanced Light Source User Meeting, October 2014.

Beyond Petascale with the HipGISAXS Software Suite Hexemer, Alexander , APS March Meeting 2014

Beyond Petascale with the HipGISAXS Software Suite Hexemer, Alexander , SC14, 2014
 
High Perfromance GISAXS Hexemer, Alexander, ACA meeting 2014

Mathematics for grazing incidence small angle X-ray scattering: Accurate form factor
computation and automatic peak detection Donatelli, Jeffrey, 2014 Advanced Light Source user Meeting, October 2014.

HipGISAXS: A Massively Parallel Code for GISAXS Simulation Chourou, Slim, APS March Meeting 2013
 
High performance GISAXS Hexemer, Alexander, GISAXS 2013 Hamburg, 2013
 
GISAXS simulation and analysis on GPU clusters Chourou, Slim, APS March Meeting 2012

 


 
Tomography



Improving tomographic reconstruction from limited data using neural networks, Pelt, D. M., CAMERA Workshop Algorithms and Software for Tomographic Reconstruction for Beamlines, Berkeley CA, Nov 2018.
 

“Tomocam”, Kumar, D, ALS User Meeting 2018, October 2018
 


Energy Materials by integrating MicroCT with microscopy, spectroscopy, and scattering, Parkinson DY, American Chemical Society, Symposium on Multimodal Characterization of Energy Materials, Washington, DC, August 2017

A survey of available algorithms and software for synchrotron microCT, Pelt, D.M., CAMERA Workshop: Algorithms and Software for Tomographic Reconstruction for Beamlines, November 2017

Efficiently parallelizable approximations to regularized iterative reconstruction algorithms, Pelt, D.M., CAMERA Workshop: Algorithms for Tomographic Reconstruction: State-of-the-Art and Future Goals, November 2016

Tomography Software at LBNL, Parkinson, DY, Algorithms for Tomographic Reconstruction, Berkeley, CA, Nov. 9-11, 2016.



Optimizing tomographic reconstruction for specific analysis tasks, Pelt, D.M., 2016 Advanced Light Source User Meeting, October 2016.



Case Studies in Multi-Modal Imaging, Parkinson DY, Multi-modal Data Analysis Workshop and Hackathon, Argonne National Laboratory, April 4-8, 2016



3D Imaging of Energy Materials, Parkinson DY, The 1st Workshop on Synchrotron Radiation Research and Energy Science between FUNSOM and ALS, Soochow University, Suzhou, China. October 28-31, 2015,




Time-resolved High Temperature Tomography, Parkinson DY, XRM2014, 12th International Conference on X-ray Microscopy, Melbourne, Australia, October 27-31, 2014.



Quantification of microstructures from microtomography images, Parkinson DY, Machine Learning for Science, November 4, 2013.



Multi-scale x-ray tomography at the ALS, Parkinson DY, ALS/CXRO Seminar, 24 August 2011



Automating image registration, reconstruction, and segmentation at the ALS tomography beamlines, Parkinson DY, Stanford Synchrotron Radiation Lightsource Users Meeting, 20 October 2010



Image processing for synchrotron-based hard and soft x-ray tomography, Parkinson DY, Xradia Seminar, 1 December 2010





Image Analysis


“Parallel Probabilistic Graphical Models for Image Segmentation”, Perciano, T., CRD All-Hands Meeting, September 2018

Searching images: characterization, retrieval and ranking for pictures across domains, D. Ushizima, Expanding Your Horizons Technical Career Workshops for Young Women (EYH - Sonoma County Chapter): motivating young women in science + mathematics, Sonoma State University, April 2018.



Computer-Aided Design and 3D Printing Workshop, D. Ushizima, Black Girls Code: Bay Area Chapter, San Francisco CA, April 2018.



Scientific Image Analysis with Convolutional Neural Networks, D. Ushizima, CoDA, Santa Fe, March 2-4, 2018.



Machine learning for image across domains, D. Ushizima, Spring 2018 Internships Brown Bag Series, Berkeley Lab, March 2018.



Machine Learning for Transformative Scientific Discovery, D. Ushizima, Silicon Valley Community Foundation Visit, Berkeley Lab, February 2018.



Image across Domains, Algorithms, Experiments and Learning: a DOE ECRP in pattern recognition, D. Ushizima, Early Career Enrichment Program, Berkeley Lab, February 2018.



Deep learning for billion-pixel digital pathology analysis: application in mapping Tau protein in the human brain, M. Alegro, D. Ushizima, Deep Learning in Biomedicine. UCSF, San Francisco, February 2018.



Predictive brain imaging, L. Grinberg, D. Ushizima, DOE officials visit UCSF, San Francisco CA, January 2018.



Mathematics in Pattern Recognition for Scientific Investigations, T. Perciano, DOE Scientific Machine Learning Workshop, January 2018.



Data Science in practice: dealing with image across domains using machine learning, D.Ushizima, Unified Meeting of Computer Scientists (ENUCOMP), Parnaiba PI, Brazil, November 2017.



Data Science in practice: dealing with image across domains using machine learning, D.Ushizima, Unifesp Computer Science Seminars, Federal University of Sao Paulo, Sao Paulo, Brazil, November 2017.



Science impact, visibility and networking at LBNL, D. Ushizima, CRD Training Workshop, Berkeley Lab, November 2017.



Computer vision and deep learning for experimental observational images, D. Ushizima, Workshop on Xi-CAM and other New Software for Synchrotron Users, from the ALS, CAMERA, and Collaborators, ALS Annual User Meeting, Berkeley Lab October 2017.



Science, Technology & Engineering women’s career within the UC system and new resources, D. Ushizima and R. Chakraborty, Women in Science and Technology Council (WSEC) Meeting, October 2017.



Data Science for Image across Domains, Experiments, Algorithms and Learning, D. Ushizima, Data Science at Scale School, Los Alamos National Laboratory, Aug 2017.



Quantitative microscopy applied to diverse specimens: materials and cells, Biotechnology Graduate Seminars, Federal University of Ouro Preto, Brazil June 2017.



High Throughput Reverse Image Search with pyCBIR: Quantification, Search, Retrieval and Ranking for Multi-modal Imaging, D. Ushizima, Workshop in Multi-dimensional and Multi-modal X-ray Imaging and Analysis, Making and Measuring in 4-Dimensions, NSLS-II and CFN User’s Meeting, Brookhaven National Laboratory, May 2017.



Building the analytical instrumentation for microscopy image analysis, D. Ushizima, 4D Advanced Microscopy of Brain Circuits Course, Zeiss Microscopy Center, UC Berkeley April 2017.



Searching images with images: characterization, retrieval and ranking, D. Ushizima, Microsoft Research Seattle March 2017.



Image Segmentation Across Domains using Parallel Markov Random Field Technique, ImageXD, T. Perciano, March 2017



Modeling Energy Materials by integrating MicroCT with microscopy, spectroscopy, and scattering, Parkinson DY, American Chemical Society, Symposium on Multimodal Characterization of Energy Materials, Washington, DC, August 2017



Using convnets to find relevant cells, D. Ushizima, California Cognitive Science Conference, UC Berkeley, May 2017.



Future Directions \& Areas of Joint Interest in Data Science, D. Ushizima, Computational Health Science Symposium, Institute for Computational Health Sciences, UC San Francisco, April 2017.



Images Across Domains, Experiments, Algorithms and Learning, D. Ushizima, DOE ASCR Computer Science Principal Investigators' (PI) Meeting: Resilience, SSIO, Design Space and SDMAV, Bethesda MD March 2017.



Women in STEM during the digital revolution, D. Ushizima, TechWomen Program, Mount Kenya University, Kenya February 2017.



Breaking the glass ceiling, D. Ushizima, TechWomen Program and Safaricomm, Tribe Hotel, Nairobi, Kenya, February 2017.



Identifying visual cues to enable searching of 3D images, D. Ushizima, ALS Annual Users’ Meeting, Berkeley Lab, Oct 2016.



Scaling Analytics for Scientific Images from Experimental Instruments, D. Ushizima, IEEE Applied Imagery Pattern Recognition, Washington DC, Oct 2016.



TechWomen Program Debriefing, D. Ushizima, TechWomen Panel at the U.S. Dept of State, Washington DC, October 2016.



3D image analysis and impact on Alzheimers disease, D. Ushizima, Moore-Sloan Foundation Data Science Environments Workshop, NY October 2016.



Searching for images across domains with CBIR, D. Ushizima, CAMERA Seminars, Berkeley Lab, September 2016.



Searching for images across domains with convolutional neural networks, D. Ushizima, Computational Sciences and Engineering Conference - the integration of experiment, big data, and modeling and simulation into instruments for discoveries in science and engineering, Gatlinburg, TN, Aug 2016.



From Face Detection to the Faces of Scientific Images, D. Ushizima, ImageXD Inaugural Workshop. UC Berkeley June 2016.



Robot Expo - building with NXT, D. Ushizima, Black Girls Code: Bay Area Chapter, UC Berkeley, Dec 2016.



Searchable datasets in Python: images across domains, experiments, algorithms and learning, D. Ushizima, PyData San Francisco October 2016.



DOE Early Career Program D. Ushizima, Panel with Director of the Office of Science Department of Energy Cherry Murray at Berkeley Lab Aug 2016.



Accelerating discovery from image-based experiments D. Ushizima, NCEM User Meeting Symposium, Berkeley Lab Aug 2016.



An overview of my research career and its challenges, T. Perciano. BLUFF Student, BLUR, CCI, SULI and VFP Student: Brown Bag Meeting, LBNL, June 2016



Gaining insight into image-based data collected from experimental science projects, T. Perciano, Computer Science Seminar, LBNL, June 2016



Picture is worth 1,000 words, but how to extract information from them? D. Ushizima, SULI, CCI and BLUR: Brown Bag Meeting March 2016.



Unveiling information from scientific images D. Ushizima, Pub-tech, Stanford CA, March 2016.



Mathematical tools for analysis of high resolution, time-resolved 3D X-ray images T. Perciano, Conference on Data Analysis 2016. March 2016.



Recognizing Patterns from Experimental Data D. Ushizima, Driving Discovery: Integration of Multi-Modal Imaging and Data Analysis, TMS Annual Meeting \& Exhibition, Feb 2016



Investigating recognition methods for a new National Library of Medicine Image Dataset, D. Ushizima, Advances in Visual Computing: 11th Int. Symp, ISVC 2015, Las Vegas, NV, USA, Dec 14-16, 2015.



Fast detection of material deformation through structural dissimilarity T. Perciano, IEEE International Conference on Big Data, November 2015.



Real-Time data pipeline and analysis using SPOT and HipGISAXS Hexemer, Alexander, GISAS Nice 2015.



Scaling Analytics for Image-based Experimental Data D. Ushizima, 3D Image Visualization and Analysis Tutorial, 2015 ALS User Meeting, October 2015.



Multi Platform image processing tools for micro-CT T. Perciano, 3D Image Visualization and Analysis Tutorial at the 2015 ALS User Meeting, October 2015.



CRIC Hackathon for Cell Recognition and Materials Analyses CRIC Conference, Fortaleza CE, Brazil, July 2015.



Image Processing and Visualization using R, T. Perciano, Postdoc Seminars Series at LBL, June 2015



A picture is worth 1,000 words, but how to extract information from them? D. Ushizima, CRD Summer Students Brown Bag, Berkeley Lab Mar 2015.



Scalability of Scientific Image Analysis, D. Ushizima, Informs Annual Meeting: Bringing Data and Decisions, San Francisco, CA, Nov 2014.



Structure Recognition from High Resolution Images of Ceramic Composites, D. Ushizima, T. Perciano, 2014 IEEE International Conference on Big Data, October 2014.



Visualization and analysis of high throughput experiments D. Ushizima, I Imaging Initiative Workshop: Tomography and Ptychography, Argonne National Laboratory, Chicago IL, September 2014.



Image Processing and Analysis Challenges: An Overview of Different Applications, T. Perciano, Data Analytics and Visualization Group Seminar Series, September 2014



Teaching machines and machine learning D. Ushizima, NERSC Brown Bag, July 2014.



Image analysis and statistics: an introduction using R and RIPA T. Perciano, The International R Users Conference, June 2014.



Delving into R Analytics for Image Analysis T. Perciano, Workshop on Algorithms for Modern Massive Data Sets, June 2014.



Dynamic Tomography at the Advanced Light Source, Parkinson DY APS user meeting, 4D Imaging Applications in Dynamic Studies Workshop, May 14, 2014



Mathematics of Computer Vision D. Ushizima. Outreach Program Bay Area Schools, HRS Oakland CA, March 2014.



Segmentation of subcellular compartments combining superpixel representation with Voronoi diagrams - awarded 1st place in code competition, D. Ushizima, IEEE International Symposium on Biomedical Imaging, Beijing, China April 2014.



How images shape your life, and shapes from images D. Ushizima, LBNL Workforce Development and Education Seminar, Berkeley, February 2014.



Analysis and visualization of image-based experiments D.Ushizima, Current Challenges in Computing (C3) Conference, Napa CA, August 2013.



Challenges and New Developments in Imaging with Large Data Sets, D. Ushizima, Joint Statistical Meeting (JSM2013), Montreal, Aug 2013.



Data analysis and management D. Ushizima, LBNL Brain Workshop, Berkeley Lab, July  2013.



Image analysis of experimental data D. Ushizima, Workshop of the Program on Statistical and Computational Methodology for Massive Datasets, Statistical and Applied Mathematical Sciences Institute (SAMSI), Research Triangle, MD, 2013.



Characterization of MRI brain scans associated to Alzheimer's disease through texture analysis D. Ushizima, IEEE International Symposium on Biomedical Imaging, New York NY, April 2013.



 Science image analysis using quant-CT in ImageJ, D. Ushizima, ImageJ User and Developer Conference, Luxembourg, LX, Oct 2012.



Algorithms for Microstructure Description applied to Microtomography, D. Ushizima, Carbon Cycle 2.0 Symposium, LBNL, Fev. 10. 2012.



I/O Workload Analysis with Server-side Data Collection, D. Ushizima, SuperComputing 2011 (SC11), Seattle, WA, Nov. 13 2011.



Statistical segmentation and porosity quantification of 3D x-ray microtomography, D.Ushizima, SPIE Optics and Photonics: XXXIV Applications of Digital Image Processing, Vol.8135-1, pp.1-14, San Diego, CA, Aug 2011.



Tracking cell dynamics from time-lapse laser scanning microscopy imagery D. Ushizima, Physical Sciences - Oncology Centers Annual Site Visit, Berkeley, CA, Aug 2011.



Computed tomography analysis in multiscale control of geologic CO2 D. Ushizima, Free University of Berlin, Germany: Institute of Computer Science and Konrad Zuse Institute of Information Technology, Berlin, June 2011.



Statistical regions in porous media and 3D structure characterization, D. Ushizima, Bay Area Vision Meeting, Google, Apr 2011.



Analysis and visualization for multiscale control of geologic CO2 D. Ushizima, Scidac Conference, Denver CO, July 2011.




Minimizing I/O contention at NERSC using data analysis, D. Ushizima, Workshop on Algorithms for Modern Massive Data Sets (MMDS'10), Stanford, CA, June 15-18, 2010



Vessel Network Detection Using Contour Evolution and Color Components, D. Ushizima, 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina. Sept 2010.



Retinopathy diagnosis from ocular fundus image analysis, D. Ushizima, Modeling and Analysis of Biomedical Image, SIAM Conference on Imaging Science (IS10), Chicago, Il, April 12-14th, 2010.



Ocular fundus and retinopathy characterization, D. Ushizima, Bay Area Vision Meeting, Feb 5th, Berkeley, CA 2010.




Materials Informatics



Discovery of nanoporous materials for energy applications, Maciej Haranczyk, Pacifichem, 2015, Dec 15-20, Honolulu, HI



Exploring Frontiers of Advanced Porous Materials, Maciej Haranczyk, Denver, CO, March 2015



Discovery of Porous Materials for Energy Applications, Maciej Haranczyk, MOF 2014 meeting, Kobe, Japan, Sept-Oct 2014



Exploring Frontiers of the Material Space of Metal-Organic Frameworks, Telluride, CA, July 2014
                        


Similarity Searching and Screening for Porous Materials, Sheffield Cheminformatics Conference, Sheffield, UK, July 2013



Exploring frontiers of high surface area MOFs, EUROMAT 2013, Sevilla, Spain, September 2013





Ptychography

"New algorithm for blind ptychography and applications in partial coherence analysis and background removal",  Chang, H. at the Ptycho-Tomography Workshop, ALS User's Meeting, Berkeley CA, October 3-4, 2018. https://sites.google.com/lbl.gov/ptycho-tomo/home

 

“High Throughput Phase Retrieval”, Marchesini, S. Keynote at XTOP 2018 – the 14th Biennial Conference on High-Resolution X-Ray Diffraction and Imaging, Bari Italy,  September 3-7 2018.

"GPU-Based Implementation of Ptycho-ADMM for High Performance X-Ray Imaging", P Enfedaque, International Conference on Computational Science,  Wuxi, China, June 11-13, 2018.

"Partially Coherent Ptychography”, Marchesini, S. SIAM conference on Imaging Science, Bologna, Italy, June 2018.



A Look into the Future of X-Ray Imaging: When Ptychography Meets GPU Acceleration Stefano Marchesini, Pablo Enfedaque, GPU Technology Conference (GTC), San Jose, CA, March 2018



High Throughput Phase Retrieval Stefano Marchesini, in Phaseless Imaging in Theory and Practice: Realistic Models, Fast Algorithms, and Recovery Guarantees,
Institute for Mathematics and Its Applications, University of Minnesota, August 14 - 18, 2017



Fast convergent splitting algorithms for (blind) phase retrieval with/without sparse prior Huibin Chang, LBNL, Berkeley,  June 2017



X ray Scattering and Phase Retrieval Stefano Marchesini , Optical Imaging and Inverse Problems, Institute for Mathematics and Its Applications, University of Minnesota, February 13 - 17, 2017



Lens design for X-ray imaging, Huibin Chang, Stefano Marchesini, Anne Sakdinawat, (SSRL/SLAC), Joint Mathematics Meeting Special Session on the Mathematics of Signal Processing, Jan. 7th, 2017



Streaming Ptychography,, Workshop on Control Systems for Next Generation Experiment Control at X-Ray Light Sources,S. Marchesini,  Lawrence Berkeley National Laboratory, September 12-14, 2016



Nanoscale coherent X-ray imaging,, S. Marchesini, Los Alamos National Laboratory,
New Mexico, May 23-26, 2016



Ptychography in real time,, S. Marchesini, SIAM conference on Imaging Science  (Albuquerque, New Mexico, May 23-26), 2016



High throughput Coherent X-ray imaging,  S. Marchesini, Coherence 2016,  SAINT MALO France, June 7-10 2016



Nanoscale coherent X-ray imaging, S. Marchesini, Stanford Pulse Institute, December, 2015
https://ultrafast.stanford.edu/events/pulse-special-seminar-nanoscale-coherent-x-ray-imaging



CAMERA-SHARP Software tools for real-time ptychographic imaging, T. Perciano, Ultra-high Resolution X-ray Imaging for the Energy Sciences at the COSMIC Beamline, at the 2015 ALS User Meeting, 2015.



Frame-wise synchronization for blind ptychography, S. Marchesini , Mathematics and Computer Science, Argonne National Lab, Aug 27 2015.



Multi Platform image processing tools for micro-CT, T. Perciano, 3D Image Visualization and Analysis Tutorial at the 2015 ALS User Meeting, 2015.



Soft x-ray ptychography of nanomaterials at the Advanced Light Source, David Shapiro (contributed), Synchrotron Radiation Instrumentation 2015



High-dimensional imaging with nanometer resolution using soft x-rays, David Shapiro , Gordon Research Conference on X-ray Science, July 2015



Phase retrieval in high dimensions, S. Marchesini, Colloquium CFEL DESY, Hamburgy 19 Dec 2014



Soft x-ray microscopy with wavelength limited spatial resolution, Davud Shapiro, invited talk,  Elettra Workshop on Advances in X-ray imaging, December 2014,



X-ray ptychography for nano-materials research,   David Shapiro,  The international conference on X-ray microscopy (XRM2014), October 2014, Melbourne



Soft x-ray microscopy with wavelength limited spatial resolution,   David Shapiro,  Workshop in support of the Australian Center of Excellence in Synchrotron Science,  November 2014, Melbourne



Diffractive x-ray imaging, David Shapiro, Workshop on soft x-ray science at diffraction limited synchrotrons, LBNL, Berkeley  October 2014,



Sharp workshop, (Fast Scalable Methods for Ptychographic imaging, Soft X ray ptychography, Kernels and cxi file format, Architecture, S. Marchesini, D. Shapiro, H. Krishnan F. Maia, Berkeley October 2014.



Detector needs for soft x-ray ptychography, David Shapiro , ALS User Meeting, Better Detectors for the ALS - Today and Tomorrow, invited talk, LBNL October 2014



Pairwise relationships in scanning diffractive imaging, S. Marchesini   Mathematical Signal Processing and Phase Retrieval Göttingen, Sept 1-3, 2014.



Soft x-ray microscopy with wavelength limited spatial resolution, Argonne Imaging Initiative workshop, David Shapiro, invited talk, "September 2014



The international workshop on phase retrieval and coherent scattering, (Coherence 2014), David Shapiro contributed talk, September 2014.



Chemical composition mapping at nanometer resolution using soft x-ray microscopy, David Shapiro, Northwestern Univ. September 2014.



Phase retrieval in high dimensions, S. Marchesini, RACIRI summer school,  Stockholm area, Sweden. Aug 24-31, 2014



Phase retrieval in high dimensional data space, S. Marchesini HT Wu* (invited ) in Advances in Phase retrieval, SIAM imaging conference, Hong Kong, May 12-14 2014,



Phase retrieval in high dimensional coherent diffraction data space, S. Marchesini,  Gordon Research Conference, X-ray Science, August 4-9, 2013



Ptychography and high dimensional phase retrieval,  S. Marchesini  97th Frontiers in Optics,  Orlando, Floorida, Oct 2013



Robust signal recovery in ptychography, S. Marchesini, Ptycho2013, Hohenkammer Castle Bavaria, Germany, May 4-7, 2013



Multi-GPU real-time ptychographic x-ray image  reconstruction, F. Maia , Ptycho2013, Hohenkammer Castle Bavaria, Germany, May 4-7, 2013



Coherent imaging, S. Marchesini , APS March Meeting 2013  Baltimore, Maryland.  March 18–22, 2013;



Multiscale algorithms for mesoscale diffractive imaging, S. Marchesini,  Real and
reciprocal space X-ray imaging, The Royal Society at Chicheley Hall, Buckinghamshir UK, Feb 2013



Inverse problems in x-ray science, S. Marchesini, Progress on Statistical Issues in Searches, A Conference Involving Statistical Issues in Astrophysics, Particle Physics and Photon Science,  SLAC National Accelerator Laboratory, Menlo Park, June 4 - 6, 2012



Coherent diffractive imaging,  S. Marchesini, ESI 2012 Modern Methods of Time-Frequency Analysis II: Phase Retrieval, Monday, October 8. - Friday, October 12. 2012,



Multi-GPU real-time ptychographic x-ray image reconstruction, F. Maia, GTC conference, San Jose, May 2012.



Cuda Accelerated X-Ray Imaging, F. Maia , Manycore and Accelerator-based High performance Scientific Computing workshop, International Center for Computational Science (ICCS) Berkeley, 2011.



Compressive Phase Contrast,  Tomography, S. Marchesini, SPIE Conference San Diego 2011.



Massively Parallel Holography, Ptychography and Diffractive imaging,  S. Marchesini,
Science at the hard X-ray diffraction limit: Diffraction microscopy, holography and ptychography
using coherent beams, Cornell Laboratory, Ithaca NY, June 2011.



Coherent Imaging at ALS, S. Marchesini, X-ray microscopy cross cutting review, ALS 2011.



Detector Denoising, S. Marchesini, ALS User's Meeting workshop 2011.



Ptychography at ALS, S. Marchesini, ALS User's Meeting workshop 2011.



The Nanoscale Surveyor, S. Marchesini S. Marchesini  ,   Carbon Cycle 2.0 Seminar, Lawrence Berkeley Lab, Oct 6 2011



Inverse Problems in X-Ray Science, S. Marchesini  Neyman Seminar, Statistics, Berkeley, Nov 9. 2011



Inverse Problems in X-Ray Science, S. Marchesini, (4 lectures), Math Dept., Berkeley, 2011




Soft X-ray Ptychography with a fast CCD, S. Marchesini , ALS User meeting workshop 2009.



Ab Initio Compressive Phase retrieval,  S. Marchesini  IUCR conference Osaka, Japan, 2008.



Inverse problems for ultrafast high resolution x-ray imaging, S. Marchesini, SIAM Conference on Imaging Science, San Diego, CA, July 7-9, 2008.



Computational Lenses, S. Marchesini, The International Workshop on Phase Retrieval and Coherent Scattering, Asilomar, California, USA, June 2007.





Xi-CAM, User Interfaces, Workflows, Remote Execution





CAMERA tomographic reconstruction and analysis capabilities, available within Xi-cam, Pandolfi, RJ, CAMERA Tomography Workshop 2017, Berkeley CA, November 8 2017



Xi-CAM and other new software for synchrotron users, from the ALS, CAMERA, and collaborators, Pandolfi, RJ (organizer), ALS User Meeting 2017, Berkeley CA, October 4 2017



Xi-cam: Platform for Synchrotron Data Reduction, Visualization, and Management, Pandolfi, RJ, Materials Data Infrastructure Integration Workshop, Dayton OH, September 11 2017



Data Management and Analysis at the Advanced Light Source, Parkinson DY, Molecular Foundry User Meeting, Berkeley, August 2017



Xi-cam: Platform for Synchrotron Data Reduction, Visualization, and Management, Pandolfi, RJ, canSAS IX, Berkeley CA, June 6 2017



Xi-cam: Flexible High Throughput Data Processing for GISAXS, Pandolfi, RJ, APS March 2017, New Orleans, March 15 2017



Gathering, linking, organizing, and mining data at the ALS, Parkinson, DY, The Future of Materials Exploration ALS user meeting workshop, Berkeley, CA, October 5, 2016



Challenges of Computing for Light-source Science, Parkinson, DY, CHEP, Computing in High Energy Physics, San Francisco, CA, 11 October 2016



Xi-cam: Addressing the Data Challenge for X-Ray Scattering, Pandolfi, RJ, 2016, ALS User Meeting 2016, Berkeley, October 4, 2016



GISAXS data reduction with Xi-cam, Pandolfi, RJ, GISAS Summer School 2016, Garching, Germany, July 17-22, 2016



HipIES: platform for synchrotron data analysis, Pandolfi, RJ, CCP-SAS, Gaithersburg, MD, 23 May 2016



HipIES: High performance integrated environment for scattering, Pandolfi, RJ,  SAS 2105, Berlin, 16 September 2015



Real-Time Data-Intensive Computing, Parkinson DY, 12th International Conference on Synchrotron Radiation Instrumentation, New York City.  July 5-10, 2015



Tomography data demo, Parkinson DY, SC14, The International Conference for High Performance Computing, Networking, Storage, and Analysis, Department of Energy Exhibition Area, New Orleans, November 17-20, 2014.



High performance tomography, Parkinson DY, Workshop at ALS User Meeting, “High Performance Algorithms, Software, Workflows, and Visualization for Synchrotrons”, October 2014



High performance algorithms and data management for tomography at the ALS, Parkinson DY, Big Data in X-ray Microscopy Workshop, XRM 2014, Melbourne, Australia, October 25-26, 2014



End users's perspective on Data Challenges, Parkinson DY, BES Facilties Computing Working Group Technical Meeting, Berkeley, February 20th 2014.



Web interfaces and High-Performance Computing: Solutions to Data Management, Processing, and Analysis Challenges at the Advanced Light Source X-ray Facility, Parkinson DY, IEEE Big Data and Science: Infrastructure and Services Workshop, 6 October 2013,



 Performance Tomography, NERSC brown bag talk, Oakland, CA, Aug. 13, 2013



Dealing with data, Parkinson DY, National User Facilities Organization, Berkeley, June 2013



Towards an end-to-end solution for light source data, Parkinson DY, CASIS workshop, Livermore, 22 May 2012



High Performance Tomography, Parkinson DY, International workshop on high-volume experimental data, computational modeling and visualization (Beijing), 18 October 2011



CAMERA



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  Five-way Light Source Directors Meeting, April 2018



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  US Department of Energy, September 2017




CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  NanoCenter Directors, December 2016



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  Diamond Light Source, Harwell, UK,  September 2016




CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  US Department of Energy, June 2016



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  APS, Argonne National Lab, April 2016



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  DOE Secretary Moniz Panel, LBNL, Jan 2016





CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  ASCAC, July 2015



CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  BESAC, Feb 2015


CAMERA: The Center for Advanced Mathematics for Energy Research Applications, Sethian, J.A.,  ALS Users Meeting, Oct 2014